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1

Metabolic networks are NP-hard to reconstruct

Zoran Nikoloski, Sergio Grimbs, Patrick May, Joachim Selbig

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 407 KB

english, 2008

2

Algebraic connectivity may explain the evolution of gene regulatory networks

Zoran Nikoloski, Patrick May, Joachim Selbig

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 371 KB

english, 2010

3

pcaMethods a bioconductor package providing PCA methods for incomplete data

Stacklies, W., Redestig, H., Scholz, M., Walther, D., Selbig, J.

Journal:

Year:

2007

Language:

english

File:

PDF, 112 KB

english, 2007

4

Structural kinetic modeling of metabolic networks

Steuer, R., Gross, T., Selbig, J., Blasius, B.

Journal:

Proceedings of the National Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 929 KB

english, 2006

5

More effort — more results: recent advances in integrative ‘omics’ data analysis

Rajasundaram, Dhivyaa, Selbig, Joachim

Journal:

Current Opinion in Plant Biology

Year:

2016

Language:

english

File:

PDF, 400 KB

english, 2016

6

Stormwater-quality performance of lined permeable pavement systems

Selbig, William R., Buer, Nicolas, Danz, Mari E.

Journal:

Journal of Environmental Management

Year:

2019

Language:

english

File:

PDF, 1.64 MB

english, 2019

7

Leachable phosphorus from senesced green ash and Norway maple leaves in urban watersheds

Wang, Yi, Thompson, Anita M., Selbig, William R.

Journal:

Science of The Total Environment

Year:

2020

File:

PDF, 7.34 MB

2020

8

Relationships between protein sequence and structure patterns based on residue contacts

Joachim Selbig, Patrick Argos

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 516 KB

english, 1998

9

Integrating Functional Knowledge during Sample Clustering for Microarray Data using Unsupervised Decision Trees

Henning Redestig, Dirk Repsilber, Florian Sohler, Joachim Selbig

Journal:

Biometrical Journal

Year:

2007

Language:

english

File:

PDF, 237 KB

english, 2007

10

Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities

Sergio Grimbs, Anne Arnold, Aneta Koseska, Jürgen Kurths, Joachim Selbig, Zoran Nikoloski

Journal:

Year:

2011

Language:

english

File:

PDF, 846 KB

english, 2011

11

Complexity of automated gene annotation

Zoran Nikoloski, Sergio Grimbs, Sebastian Klie, Joachim Selbig

Journal:

Year:

2011

Language:

english

File:

PDF, 497 KB

english, 2011

12

Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells

Kathrin Jürchott, Ke-Tai Guo, Gareth Catchpole, Kristen Feher, Lothar Willmitzer, Christian Schichor, Joachim Selbig

Journal:

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

13

Differential mRNA Expression of the Two Mineralocorticoid Receptor Splice Variants Within the Human Brain: Structure Analysis of their Different DNA Binding Domains

L. Wickert, J. Selbig, M. Watzka, B. Stoffel-Wagner, J. Schramm, F. Bidlingmeier, M. Ludwig

Journal:

Journal of Neuroendocrinology

Year:

2000

Language:

english

File:

PDF, 212 KB

english, 2000

14

Analysis of protein sheet topologies by graph theoretical methods

Ina Koch, Frieder Kaden, Joachim Selbig

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1992

Language:

english

File:

PDF, 755 KB

english, 1992

15

Pemphigoide (bullöse) Masern und Pemphigus bei Masern

Gertrud Selbiger

Journal:

European Journal of Pediatrics

Year:

1924

Language:

german

File:

PDF, 1.16 MB

german, 1924

16

QTL analysis of early stage heterosis for biomass in Arabidopsis

Rhonda Christiane Meyer, Barbara Kusterer, Jan Lisec, Matthias Steinfath, Martina Becher, Hanno Scharr, Albrecht E. Melchinger, Joachim Selbig, Ulrich Schurr, Lothar Willmitzer, Thomas Altmann

Journal:

Theoretical and Applied Genetics

Year:

2010

Language:

english

File:

PDF, 364 KB

english, 2010

17

Prediction of hybrid biomass inArabidopsis thalianaby selected parental SNP and metabolic markers

Matthias Steinfath, Tanja Gärtner, Jan Lisec, Rhonda C. Meyer, Thomas Altmann, Lothar Willmitzer, Joachim Selbig

Journal:

Theoretical and Applied Genetics

Year:

2010

Language:

english

File:

PDF, 313 KB

english, 2010

18

Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis

Sandra Andorf, Joachim Selbig, Thomas Altmann, Kathrin Poos, Hanna Witucka-Wall, Dirk Repsilber

Journal:

Theoretical and Applied Genetics

Year:

2010

Language:

english

File:

PDF, 695 KB

english, 2010

19

Predicting impaired glucose metabolism in women with polycystic ovary syndrome by decision tree modelling

M. Möhlig, A. Flöter, J. Spranger, M. O. Weickert, T. Schill, H. W. Schlösser, G. Brabant, A. F. H. Pfeiffer, J. Selbig, C. Schöfl

Journal:

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

20

Modeling Biological Networks by Action Languages via Answer Set Programming

Steve Dworschak, Susanne Grell, Victoria J. Nikiforova, Torsten Schaub, Joachim Selbig

Journal:

Year:

2008

Language:

english

File:

PDF, 834 KB

english, 2008

21

Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite–protein networks and improve pattern recognition for multiple biomarker selection

Katja Morgenthal, Stefanie Wienkoop, Matthias Scholz, Joachim Selbig, Wolfram Weckwerth

Journal:

Year:

2005

Language:

english

File:

PDF, 590 KB

english, 2005

22

Decision tree supported substructure prediction of metabolites from GC-MS profiles

Jan Hummel, Nadine Strehmel, Joachim Selbig, Dirk Walther, Joachim Kopka

Journal:

Year:

2010

Language:

english

File:

PDF, 662 KB

english, 2010

23

Knowledge-based prediction of protein structures

F. Kaden, I. Koch, J. Selbig

Journal:

Journal of Theoretical Biology

Year:

1990

Language:

english

File:

PDF, 789 KB

english, 1990

24

mapman: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

Oliver Thimm, Oliver Bläsing, Yves Gibon, Axel Nagel, Svenja Meyer, Peter Krüger, Joachim Selbig, Lukas A. Müller, Seung Y. Rhee, Mark Stitt

Journal:

The Plant Journal

Year:

2004

Language:

english

File:

PDF, 991 KB

english, 2004

25

Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations

Jan Lisec, Rhonda C. Meyer, Matthias Steinfath, Henning Redestig, Martina Becher, Hanna Witucka-Wall, Oliver Fiehn, Ottó Törjék, Joachim Selbig, Thomas Altmann, Lothar Willmitzer

Journal:

The Plant Journal

Year:

2008

Language:

english

File:

PDF, 409 KB

english, 2008

26

Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations

Jan Lisec, Matthias Steinfath, Rhonda C. Meyer, Joachim Selbig, Albrecht E. Melchinger, Lothar Willmitzer, Thomas Altmann

Journal:

The Plant Journal

Year:

2009

Language:

english

File:

PDF, 706 KB

english, 2009

27

Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns

Jan Lisec, Lilla Römisch-Margl, Zoran Nikoloski, Hans-Peter Piepho, Patrick Giavalisco, Joachim Selbig, Alfons Gierl, Lothar Willmitzer

Journal:

The Plant Journal

Year:

2011

Language:

english

File:

PDF, 570 KB

english, 2011

28

Metabolomics of temperature stress

Charles Guy, Fatma Kaplan, Joachim Kopka, Joachim Selbig, Dirk K. Hincha

Journal:

Physiologia Plantarum

Year:

2008

Language:

english

File:

PDF, 552 KB

english, 2008

29

Metabolite profile analysis: from raw data to regression and classification

Matthias Steinfath, Detlef Groth, Jan Lisec, Joachim Selbig

Journal:

Physiologia Plantarum

Year:

2008

Language:

english

File:

PDF, 170 KB

english, 2008

30

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach

Matthias Steinfath, Nadine Strehmel, Rolf Peters, Nicolas Schauer, Detlef Groth, Jan Hummel, Martin Steup, Joachim Selbig, Joachim Kopka, Peter Geigenberger, Joost T. Van Dongen

Journal:

Plant Biotechnology Journal

Year:

2010

Language:

english

File:

PDF, 342 KB

english, 2010

31

Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws – a promising method for speeding up the kinetic modelling of complex metabolic networks

Sascha Bulik, Sergio Grimbs, Carola Huthmacher, Joachim Selbig, Hermann G. Holzhütter

Journal:

Year:

2009

Language:

english

File:

PDF, 507 KB

english, 2009

32

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

Urbanczyk-Wochniak, Ewa, Luedemann, Alexander, Kopka, Joachim, Selbig, Joachim, Roessner-Tunali, Ute, Willmitzer, Lothar, Fernie, Alisdair R.

Journal:

Year:

2003

Language:

english

File:

PDF, 134 KB

english, 2003

33

A new network model explains the evolution of plant-specific metabolic networks

Zoran Nikoloski, Patrick May, Joachim Selbig

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Year:

2009

Language:

english

File:

PDF, 58 KB

english, 2009

34

Mesenchymal stem cells and glioma cells form a structural as well as a functional syncytium in vitro

Christian Schichor, Valerie Albrecht, Benjamin Korte, Alexander Buchner, Rainer Riesenberg, Josef Mysliwietz, Igor Paron, Helena Motaln, Tamara Lah Turnšek, Kathrin Jürchott, Joachim Selbig, Joerg-Chr

Journal:

Experimental Neurology

Year:

2012

Language:

english

File:

PDF, 1.87 MB

english, 2012

35

Detection of patients with coronary artery disease using cardiac magnetic field mapping at rest

Andrej Gapelyuk, Niels Wessel, Robert Fischer, Udo Zacharzowsky, Lydia Koch, Daniela Selbig, Henry Schütt, Bianca Sawitzki, Friedrich C. Luft, Rainer Dietz, Alexander Schirdewan

Journal:

Journal of Electrocardiology

Year:

2007

Language:

english

File:

PDF, 746 KB

english, 2007

36

Metabolic profiling reveals key metabolic features of renal cell carcinoma

Gareth Catchpole, Alexander Platzer, Cornelia Weikert, Carsten Kempkensteffen, Manfred Johannsen, Hans Krause, Klaus Jung, Kurt Miller, Lothar Willmitzer, Joachim Selbig, Steffen Weikert

Journal:

Journal of Cellular and Molecular Medicine

Year:

2011

Language:

english

File:

PDF, 797 KB

english, 2011

37

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

Pawel Durek, Christian Schudoma, Wolfram Weckwerth, Joachim Selbig, Dirk Walther

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.20 MB

english, 2009

38

Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach

Dirk Repsilber, Sabine Kern, Anna Telaar, Gerhard Walzl, Gillian F Black, Joachim Selbig, Shreemanta K Parida, Stefan HE Kaufmann, Marc Jacobsen

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.42 MB

english, 2010

39

Estimating mutual information using B-spline functions – an improved similarity measure for analysing gene expression data

Carsten O Daub, Ralf Steuer, Joachim Selbig, Sebastian Kloska

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 438 KB

english, 2004

40

Species-specific analysis of protein sequence motifs using mutual information

Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joachim Selbig

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 376 KB

english, 2005

41

Validation and functional annotation of expression-based clusters based on gene ontology

Ralf Steuer, Peter Humburg, Joachim Selbig

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 340 KB

english, 2006

42

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

Jan Hummel, Michaela Niemann, Stefanie Wienkoop, Waltraud Schulze, Dirk Steinhauser, Joachim Selbig, Dirk Walther, Wolfram Weckwerth

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 483 KB

english, 2007

43

Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana

Henning Redestig, Daniel Weicht, Joachim Selbig, Matthew A Hannah

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 725 KB

english, 2007

44

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms inArabidopsis thaliana

Diego Mauricio Riaño-Pachón, Sabrina Kleessen, Jost Neigenfind, Pawel Durek, Elke Weber, Wolfgang R Engelsberger, Dirk Walther, Joachim Selbig, Waltraud X Schulze, Birgit Kersten

Journal:

Year:

2010

Language:

english

File:

PDF, 1.64 MB

english, 2010

45

Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT

Jost Neigenfind, Gabor Gyetvai, Rico Basekow, Svenja Diehl, Ute Achenbach, Christiane Gebhardt, Joachim Selbig, Birgit Kersten

Journal:

Year:

2008

Language:

english

File:

PDF, 842 KB

english, 2008

46

A distinct metabolic signature predicts development of fasting plasma glucose

Manuela Hische, Abdelhalim Larhlimi, Franziska Schwarz, Antje Fischer-Rosinský, Thomas Bobbert, Anke Assmann, Gareth S Catchpole, Andreas FH Pfeiffer, Lothar Willmitzer, Joachim Selbig, Joachim Sprang

Journal:

Journal of Clinical Bioinformatics

Year:

2012

Language:

english

File:

PDF, 289 KB

english, 2012

47

Applying machine learning methods for finding significant amino acid properties in proteins

Joachim Selbig, Frieder Kaden, Ina Koch

Journal:

Year:

1992

Language:

english

File:

PDF, 478 KB

english, 1992

48

Late lumen loss and follow-up percent diameter stenosis at different doses of oral valsartan six months after bare-metal stent implantation in type B2/C coronary lesions

Stefan Peters, Brigitte Koehler, Heidemarie Steffen, Anke Rählert-Sommer, Daniela Selbig, Martina Trümmel

Journal:

International Journal of Cardiology

Year:

2010

Language:

english

File:

PDF, 114 KB

english, 2010

49

Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy

Melanie Balduin, Saleta Sierra, Martin P Däumer, Jürgen K Rockstroh, Mark Oette, Gerd Fätkenheuer, Bernd Kupfer, Niko Beerenwinkel, Daniel Hoffmann, Joachim Selbig, Herbert J Pfister, Rolf Kaiser

Journal:

Journal of Clinical Virology

Year:

2005

Language:

english

File:

PDF, 258 KB

english, 2005

50

Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information

Wolfram Weckwerth, Joachim Selbig

Journal:

Biochemical and Biophysical Research Communications

Year:

2003

Language:

english

File:

PDF, 283 KB

english, 2003